Variant report

Variant	rs7128845
Chromosome Location	chr11:59378540-59378541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59332513..59335346-chr11:59377143..59379065,2	K562	blood:
2	chr11:59358338..59361390-chr11:59376004..59379219,3	K562	blood:
3	chr11:59373266..59379105-chr11:59379660..59383510,5	MCF-7	breast:
4	chr11:59367319..59373347-chr11:59375671..59384148,16	K562	blood:
5	chr11:59362508..59365255-chr11:59378234..59380693,3	K562	blood:
6	chr11:59340962..59342782-chr11:59376375..59380389,3	K562	blood:

Variant related genes	Relation type
ENSG00000110048	Chromatin interaction
ENSG00000255008	Chromatin interaction
ENSG00000264559	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17153863	1.00[AMR][1000 genomes]
rs17153877	1.00[AMR][1000 genomes]
rs17153914	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153987	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3949113	0.91[AFR][1000 genomes]
rs4040	0.89[AFR][1000 genomes]
rs7103832	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7120176	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125454	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927216	1.00[AMR][1000 genomes]
rs7942872	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1833978	chr11:59377543-59383631	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1842135	chr11:59377543-59383631	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59334200-59382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:59342000-59379000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:59343800-59382000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:59353400-59378800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:59353600-59378600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:59353800-59379400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:59354400-59379400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:59354600-59379600	Strong transcription	Thymus	Thymus
9	chr11:59355800-59379800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:59357400-59379000	Strong transcription	GM12878-XiMat	blood
11	chr11:59357600-59379200	Strong transcription	K562	blood
12	chr11:59357800-59380600	Strong transcription	Primary B cells from cord blood	blood
13	chr11:59358400-59382000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:59359200-59378600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:59367800-59378600	Weak transcription	Stomach Mucosa	stomach
16	chr11:59369800-59379000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:59372600-59378600	Strong transcription	HepG2	liver
18	chr11:59373000-59379400	Strong transcription	Hela-S3	cervix
19	chr11:59374000-59379200	Weak transcription	Small Intestine	intestine
20	chr11:59375600-59378600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:59376200-59378800	Genic enhancers	Fetal Muscle Leg	muscle
22	chr11:59376200-59381200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:59376400-59379400	Weak transcription	Right Atrium	heart
24	chr11:59376400-59382200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:59376600-59379000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr11:59376600-59380200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:59376800-59380800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
28	chr11:59377200-59378600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:59377200-59378800	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:59377200-59378800	Weak transcription	Fetal Brain Male	brain
31	chr11:59377200-59379000	Enhancers	Fetal Heart	heart
32	chr11:59377400-59378800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:59377600-59378600	Enhancers	Psoas Muscle	Psoas
34	chr11:59377800-59378800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr11:59377800-59378800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:59377800-59379000	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:59377800-59379200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:59377800-59381200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr11:59378000-59378600	Weak transcription	Adipose Nuclei	Adipose
40	chr11:59378000-59378600	Weak transcription	Brain Germinal Matrix	brain
41	chr11:59378000-59378600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:59378000-59378600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr11:59378000-59378600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:59378000-59379000	Weak transcription	Fetal Kidney	kidney
45	chr11:59378000-59379000	Weak transcription	Fetal Lung	lung
46	chr11:59378000-59379200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:59378000-59379200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:59378000-59379200	Weak transcription	Brain Substantia Nigra	brain
49	chr11:59378000-59379400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:59378000-59379400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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