Variant report

Variant	rs17153863
Chromosome Location	chr11:59291725-59291726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17153877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153914	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153928	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153977	1.00[AMR][1000 genomes]
rs17153987	1.00[AMR][1000 genomes]
rs7103832	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7120176	1.00[AMR][1000 genomes]
rs7125454	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128845	1.00[AMR][1000 genomes]
rs7927216	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942872	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59291600-59294400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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