Variant report

Variant	rs7942872
Chromosome Location	chr11:59276288-59276289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17153863	1.00[AMR][1000 genomes]
rs17153877	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs17153914	1.00[AMR][1000 genomes]
rs17153928	1.00[AMR][1000 genomes]
rs17153977	1.00[AMR][1000 genomes]
rs17153987	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs4040	0.87[YRI][hapmap]
rs7103832	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs7120176	1.00[AMR][1000 genomes]
rs7125454	1.00[AMR][1000 genomes]
rs7128845	1.00[AMR][1000 genomes]
rs7927216	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59276000-59276800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr11:59276000-59276800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr11:59276000-59277200	Enhancers	Dnd41	blood
4	chr11:59276000-59278000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:59276000-59278200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:59276000-59279400	Enhancers	Primary hematopoietic stem cells	blood
7	chr11:59276200-59276600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr11:59276200-59276600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr11:59276200-59276600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr11:59276200-59276600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:59276200-59276600	Enhancers	Adipose Nuclei	Adipose
12	chr11:59276200-59276600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr11:59276200-59277000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:59276200-59277200	Enhancers	Hela-S3	cervix
15	chr11:59276200-59278200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:59276200-59279800	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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