Variant report

Variant	rs7927216
Chromosome Location	chr11:59300141-59300142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17153863	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153877	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153914	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153928	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17153977	1.00[AMR][1000 genomes]
rs17153987	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs3015969	0.85[YRI][hapmap]
rs4040	0.83[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs7103832	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7120176	1.00[AMR][1000 genomes]
rs7125454	1.00[AMR][1000 genomes]
rs7128845	1.00[AMR][1000 genomes]
rs7942872	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv972925	chr11:59299418-59314660	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59296200-59304800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:59297200-59301800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:59299800-59304200	Weak transcription	K562	blood
4	chr11:59300000-59304800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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