Variant report

Variant	rs398018398
Chromosome Location	chr12:10703817-10703818
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr12:10703801-10704407	GM12878	blood:	n/a	chr12:10704304-10704313

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EIF2S3L.1-4	chr12:10703809-10704403	NONHSAT026884

Variant related genes	Relation type
ENSG00000256039	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898766	chr12:10537269-10722585	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv557459	chr12:10560591-10729821	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv898772	chr12:10622047-10722585	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv557479	chr12:10644663-10729821	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv898773	chr12:10660850-10722585	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv898774	chr12:10666025-10722585	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv898775	chr12:10668694-10735786	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1039120	chr12:10675930-10755446	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	esv3415666	chr12:10702785-10704833	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv2575322	chr12:10703211-10704784	Enhancers Weak transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv2247882	chr12:10703300-10703996	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3482552	chr12:10703371-10703889	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3426143	chr12:10703386-10703907	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3528969	chr12:10703398-10703920	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv3482596	chr12:10703408-10703878	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3443522	chr12:10703413-10703869	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3528970	chr12:10703415-10703847	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv3482574	chr12:10703423-10703880	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv3394999	chr12:10703433-10703868	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv3482563	chr12:10703435-10703838	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv3528971	chr12:10703441-10703870	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
23	esv3432716	chr12:10703453-10703838	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv3482585	chr12:10703474-10703819	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
25	esv3482607	chr12:10703488-10703829	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
26	esv3528972	chr12:10703488-10703829	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
27	esv1446506	chr12:10703816-10703817	Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10699600-10705200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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