Variant report

Variant	rs398068
Chromosome Location	chr21:17354099-17354100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16991976	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823527	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs379332	0.84[EUR][1000 genomes]
rs424868	0.84[EUR][1000 genomes]
rs66771945	0.80[EUR][1000 genomes]
rs67491042	0.80[EUR][1000 genomes]
rs73187454	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187465	0.86[EUR][1000 genomes]
rs73187468	0.84[EUR][1000 genomes]
rs73187483	0.86[EUR][1000 genomes]
rs73187487	0.86[EUR][1000 genomes]
rs73187492	0.84[EUR][1000 genomes]
rs73189356	0.86[EUR][1000 genomes]
rs73189362	0.86[EUR][1000 genomes]
rs73189364	0.87[EUR][1000 genomes]
rs73189378	0.80[EUR][1000 genomes]
rs73189381	0.80[EUR][1000 genomes]
rs73189383	0.80[EUR][1000 genomes]
rs73189389	0.82[EUR][1000 genomes]
rs9983065	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17353600-17354200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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