Variant report
| Variant | rs73189389 |
|---|---|
| Chromosome Location | chr21:17381888-17381889 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:17379808..17382152-chr21:17382746..17385605,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs2823548 | 1.00[ASN][1000 genomes] |
| rs379332 | 0.90[EUR][1000 genomes] |
| rs398068 | 0.82[EUR][1000 genomes] |
| rs424868 | 0.90[EUR][1000 genomes] |
| rs66771945 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs66837398 | 1.00[ASN][1000 genomes] |
| rs67491042 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7280631 | 1.00[ASN][1000 genomes] |
| rs73187465 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73187468 | 0.90[EUR][1000 genomes] |
| rs73187483 | 0.92[EUR][1000 genomes] |
| rs73187487 | 0.92[EUR][1000 genomes] |
| rs73187492 | 0.90[EUR][1000 genomes] |
| rs73189356 | 0.92[EUR][1000 genomes] |
| rs73189362 | 0.92[EUR][1000 genomes] |
| rs73189364 | 0.94[EUR][1000 genomes] |
| rs73189378 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73189381 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73189383 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73189390 | 1.00[ASN][1000 genomes] |
| rs73191491 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9981871 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1064664 | chr21:17336936-17405756 | Enhancers Active TSS Flanking Active TSS Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3358532 | chr21:17380631-17382679 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:17380800-17384000 | Weak transcription | Osteobl | bone |
