Variant report

Variant	rs73187487
Chromosome Location	chr21:17364642-17364643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs379332	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs398068	0.86[EUR][1000 genomes]
rs424868	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66771945	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67491042	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187454	0.82[EUR][1000 genomes]
rs73187465	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187468	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187483	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187492	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73189356	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73189362	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73189364	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73189378	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73189381	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73189383	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73189389	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064664	chr21:17336936-17405756	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3376626	chr21:17363331-17365429	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3338941	chr21:17363731-17364979	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17363400-17365200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr21:17363400-17365600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr21:17363400-17365600	Enhancers	HUVEC	blood vessel
4	chr21:17363600-17365200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr21:17363800-17364800	Weak transcription	Hela-S3	cervix
6	chr21:17364400-17364800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr21:17364400-17364800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr21:17364400-17365200	Enhancers	HSMM	muscle
9	chr21:17364600-17365000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr21:17364600-17365000	Enhancers	A549	lung
11	chr21:17364600-17365200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr21:17364600-17365200	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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