Variant report

Variant	rs4007511
Chromosome Location	chr1:186427561-186427562
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10489392	0.81[ASN][1000 genomes]
rs10489393	0.81[ASN][1000 genomes]
rs10798041	0.81[ASN][1000 genomes]
rs10798042	0.81[ASN][1000 genomes]
rs10911861	0.81[ASN][1000 genomes]
rs10911863	0.81[ASN][1000 genomes]
rs10911864	0.81[ASN][1000 genomes]
rs10911866	0.81[ASN][1000 genomes]
rs10911867	0.81[ASN][1000 genomes]
rs10911868	0.81[ASN][1000 genomes]
rs10911869	0.81[ASN][1000 genomes]
rs10911870	0.81[ASN][1000 genomes]
rs10911871	0.81[ASN][1000 genomes]
rs10911872	0.81[ASN][1000 genomes]
rs10911873	0.81[ASN][1000 genomes]
rs11578514	0.81[ASN][1000 genomes]
rs11578546	0.81[ASN][1000 genomes]
rs11589235	0.81[ASN][1000 genomes]
rs11589637	0.81[ASN][1000 genomes]
rs11590457	0.81[ASN][1000 genomes]
rs12062743	0.81[ASN][1000 genomes]
rs12094398	0.81[ASN][1000 genomes]
rs12401657	0.81[ASN][1000 genomes]
rs12403321	0.81[ASN][1000 genomes]
rs12406189	0.81[ASN][1000 genomes]
rs12406209	0.81[ASN][1000 genomes]
rs12407957	0.81[ASN][1000 genomes]
rs12409263	0.81[ASN][1000 genomes]
rs12410237	0.81[ASN][1000 genomes]
rs16825452	0.81[ASN][1000 genomes]
rs1882926	0.81[ASN][1000 genomes]
rs1929095	0.81[ASN][1000 genomes]
rs2383385	0.81[ASN][1000 genomes]
rs34869216	0.81[ASN][1000 genomes]
rs35066734	0.81[ASN][1000 genomes]
rs35999012	0.81[ASN][1000 genomes]
rs3851886	0.81[ASN][1000 genomes]
rs3934200	0.81[ASN][1000 genomes]
rs55812689	0.81[ASN][1000 genomes]
rs58982724	0.81[ASN][1000 genomes]
rs59516785	0.81[ASN][1000 genomes]
rs60982539	0.81[ASN][1000 genomes]
rs6669319	0.81[ASN][1000 genomes]
rs67396678	0.81[ASN][1000 genomes]
rs67488110	0.81[ASN][1000 genomes]
rs67588474	0.81[ASN][1000 genomes]
rs68164021	0.81[ASN][1000 genomes]
rs73048464	0.81[ASN][1000 genomes]
rs73048477	0.81[ASN][1000 genomes]
rs7544457	0.81[ASN][1000 genomes]
rs7555973	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1822818	chr1:186301447-186441585	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1012164	chr1:186323867-186565995	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv2762201	chr1:186323879-186566007	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	esv1824284	chr1:186358588-186441585	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv946542	chr1:186427201-186430101	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186404200-186431400	Weak transcription	GM12878-XiMat	blood
2	chr1:186406600-186450000	Weak transcription	Brain Angular Gyrus	brain

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