The 2.0 version of rSNPBase

Variant report

Variant rs11589235
Chromosome Location chr1:186395819-186395820
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:186345400-186398200 Weak transcription Spleen Spleen
2 chr1:186362400-186405600 Weak transcription Brain Angular Gyrus brain
3 chr1:186362800-186405600 Weak transcription Right Ventricle heart
4 chr1:186368600-186398200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:186372000-186398200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:186372000-186406000 Weak transcription Pancreas Pancrea
7 chr1:186376800-186399600 Weak transcription Cortex derived primary cultured neurospheres brain
8 chr1:186380000-186398800 Weak transcription Brain Germinal Matrix brain
9 chr1:186388600-186399400 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr1:186388600-186404600 Weak transcription Brain Cingulate Gyrus brain
11 chr1:186388600-186408000 Weak transcription Fetal Brain Female brain
12 chr1:186388600-186411600 Weak transcription A549 lung
13 chr1:186388600-186417400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr1:186388800-186396400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr1:186388800-186397400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr1:186388800-186405800 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr1:186388800-186409400 Weak transcription Colon Smooth Muscle Colon
18 chr1:186388800-186409400 Weak transcription Placenta Amnion Placenta Amnion
19 chr1:186389000-186413000 Weak transcription Brain Substantia Nigra brain
20 chr1:186389200-186406400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:186389600-186396000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:186389600-186396800 Weak transcription Fetal Muscle Trunk muscle
23 chr1:186389600-186397800 Weak transcription Rectal Smooth Muscle rectum
24 chr1:186389600-186405200 Weak transcription Brain Anterior Caudate brain
25 chr1:186389600-186406800 Weak transcription Fetal Muscle Leg muscle
26 chr1:186389600-186407600 Weak transcription Aorta Aorta
27 chr1:186389600-186407800 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr1:186389600-186409200 Weak transcription HUVEC blood vessel
29 chr1:186389600-186411600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:186389600-186415600 Weak transcription Stomach Smooth Muscle stomach
31 chr1:186389800-186409000 Weak transcription Hela-S3 cervix
32 chr1:186389800-186411400 Weak transcription Primary hematopoietic stem cells blood
33 chr1:186390000-186405800 Weak transcription Primary T cells fromperipheralblood blood
34 chr1:186390200-186397200 Weak transcription Primary monocytes fromperipheralblood blood
35 chr1:186390200-186398600 Weak transcription Fetal Lung lung
36 chr1:186390400-186397400 Weak transcription Monocytes-CD14+_RO01746 blood
37 chr1:186390400-186405400 Weak transcription Liver Liver
38 chr1:186390800-186397200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr1:186390800-186411600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:186394000-186397200 Weak transcription Left Ventricle heart
41 chr1:186394000-186398000 Weak transcription Right Atrium heart
42 chr1:186394000-186414400 Weak transcription HSMM muscle
43 chr1:186394400-186396000 Strong transcription Brain Inferior Temporal Lobe brain
44 chr1:186394400-186398400 Strong transcription Brain Hippocampus Middle brain
45 chr1:186394600-186414600 Weak transcription Primary T cells from cord blood blood
46 chr1:186395200-186406800 Weak transcription Fetal Brain Male brain
47 chr1:186395600-186407800 Weak transcription Psoas Muscle Psoas
48 chr1:186395600-186413400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
49 chr1:186395800-186407200 Weak transcription Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015