Variant report

Variant	rs6677914
Chromosome Location	chr1:186423341-186423342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10489392	0.89[ASN][1000 genomes]
rs10489393	0.89[ASN][1000 genomes]
rs10798041	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10798042	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10798044	0.82[ASN][1000 genomes]
rs10798045	0.82[ASN][1000 genomes]
rs10798046	0.87[ASN][1000 genomes]
rs10911861	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911863	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911864	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911866	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911867	0.82[ASN][1000 genomes]
rs10911868	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911869	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911870	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911871	0.89[ASN][1000 genomes]
rs10911872	0.89[ASN][1000 genomes]
rs10911873	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10911874	0.82[ASN][1000 genomes]
rs10911880	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11484607	0.82[ASN][1000 genomes]
rs11578514	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11578546	0.89[ASN][1000 genomes]
rs11589235	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11589637	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11590457	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12062743	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12071770	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12072014	0.82[ASN][1000 genomes]
rs12078657	0.82[ASN][1000 genomes]
rs12081060	0.81[AMR][1000 genomes]
rs12089415	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12092372	0.82[ASN][1000 genomes]
rs12094398	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12096518	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12401657	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12402484	0.81[EUR][1000 genomes]
rs12403321	0.89[ASN][1000 genomes]
rs12404145	0.82[ASN][1000 genomes]
rs12406189	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12406209	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12407957	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12409263	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12410237	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1319120	0.82[ASN][1000 genomes]
rs16825452	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16825469	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1882926	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1929095	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2383385	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2383386	0.82[ASN][1000 genomes]
rs2383505	0.81[EUR][1000 genomes]
rs34869216	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35066734	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35999012	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3851884	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3851886	0.89[ASN][1000 genomes]
rs3863719	0.82[ASN][1000 genomes]
rs3934200	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55812689	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56767915	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57390268	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58982724	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59516785	0.89[ASN][1000 genomes]
rs60682317	0.82[ASN][1000 genomes]
rs60982539	0.89[ASN][1000 genomes]
rs6425031	0.82[ASN][1000 genomes]
rs6669319	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6671561	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6672638	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679923	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6687784	0.82[ASN][1000 genomes]
rs6692629	0.95[AMR][1000 genomes]
rs67396678	0.89[ASN][1000 genomes]
rs67488110	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67588474	0.89[ASN][1000 genomes]
rs67744944	0.82[ASN][1000 genomes]
rs68164021	0.89[ASN][1000 genomes]
rs72719487	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72719501	0.81[AMR][1000 genomes]
rs73048464	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73048477	0.89[ASN][1000 genomes]
rs7521968	0.82[ASN][1000 genomes]
rs7523747	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7525586	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7526069	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7534971	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7544457	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7555973	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1822818	chr1:186301447-186441585	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1012164	chr1:186323867-186565995	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv2762201	chr1:186323879-186566007	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	esv1824284	chr1:186358588-186441585	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186404200-186431400	Weak transcription	GM12878-XiMat	blood
2	chr1:186406600-186450000	Weak transcription	Brain Angular Gyrus	brain
3	chr1:186422800-186425800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:186422800-186426600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links