Variant report

Variant	rs4014790
Chromosome Location	chr9:99956086-99956087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10981209	0.80[ASN][1000 genomes]
rs12235734	0.80[ASN][1000 genomes]
rs3829122	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3862336	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4014789	0.82[ASN][1000 genomes]
rs7020393	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042707	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7863123	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7866267	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972432	chr9:99874607-99958095	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv931946	chr9:99895658-100005099	Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893607	chr9:99906545-99996548	Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893608	chr9:99906545-100005128	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99911600-99957600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:99934400-99957800	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:99934800-99957400	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:99936600-99957600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:99942800-99962600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:99949200-99962400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:99951600-99956200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:99953600-99957400	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr9:99954400-99957400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:99954800-99957600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:99955000-99957400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:99955400-99956800	Strong transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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