Variant report

Variant	rs10981209
Chromosome Location	chr9:99982366-99982367
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10116019	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10119245	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10122063	0.90[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs10125198	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs10435868	0.90[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap]
rs10448274	0.90[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs10759522	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10817170	0.81[EUR][1000 genomes]
rs10817173	0.83[EUR][1000 genomes]
rs10817265	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10980874	0.83[EUR][1000 genomes]
rs10981280	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10981288	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10981296	0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10981329	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10981890	0.82[CHB][hapmap];0.84[JPT][hapmap];0.94[YRI][hapmap]
rs11562326	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11791310	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11794422	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11998999	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12003313	0.83[EUR][1000 genomes]
rs12004930	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12005128	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12235734	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13297670	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13298346	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13299029	0.80[EUR][1000 genomes]
rs13299627	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap];0.83[EUR][1000 genomes]
rs13301357	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13302699	0.82[EUR][1000 genomes]
rs1544203	0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap]
rs1857083	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1903635	0.83[JPT][hapmap]
rs1947717	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs2169456	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs2219664	0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs2242187	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs2306097	0.90[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap]
rs2374923	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2493442	0.86[CHB][hapmap]
rs2502644	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs2615143	0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap]
rs2615145	0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap]
rs2795367	0.86[CEU][hapmap];0.95[CHB][hapmap];0.93[YRI][hapmap]
rs2818238	0.91[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap]
rs2818243	0.91[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap]
rs28846196	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3214072	0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs34382632	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3747489	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs3747493	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs3747496	0.90[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap]
rs3957904	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3994556	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4014783	0.83[EUR][1000 genomes]
rs4014789	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4014790	0.80[ASN][1000 genomes]
rs4145255	0.81[EUR][1000 genomes]
rs4237189	0.90[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs4284138	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4313271	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4366181	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4452918	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4523385	0.81[CHB][hapmap]
rs4626726	0.87[EUR][1000 genomes]
rs4743072	0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs4743076	0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap]
rs4743077	0.90[CHB][hapmap];0.89[JPT][hapmap];0.80[YRI][hapmap]
rs4743084	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs55694850	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62556614	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6478020	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6478095	0.90[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap]
rs7020393	0.80[ASN][1000 genomes]
rs7022475	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7031789	0.82[EUR][1000 genomes]
rs7042707	0.81[ASN][1000 genomes]
rs713066	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs72747776	0.83[EUR][1000 genomes]
rs750674	0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs7850392	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7850429	0.82[AMR][1000 genomes]
rs7850504	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7855366	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7855622	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7866267	0.80[ASN][1000 genomes]
rs7868440	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7868563	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7868806	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7869509	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7869568	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7869587	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7869959	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931946	chr9:99895658-100005099	Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893607	chr9:99906545-99996548	Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893608	chr9:99906545-100005128	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv972433	chr9:99962059-99983443	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10981209	ANKRD18CP	cis	Thyroid	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99976200-99983000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr9:99976600-99985000	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr9:99976600-99985000	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:99976800-99985200	Active TSS	H9 Cell Line	embryonic stem cell
5	chr9:99976800-99985400	Active TSS	H1 Cell Line	embryonic stem cell
6	chr9:99979600-99982400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:99980000-99983000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:99981400-99985000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr9:99981800-99985000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr9:99982000-99985000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr9:99982000-99985200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:99982200-99982400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:99982200-99983200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr9:99982200-99985200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

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