Variant report

Variant	rs2795367
Chromosome Location	chr9:100046847-100046848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10122063	0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs10125198	0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1037948	0.84[ASN][1000 genomes]
rs10435867	0.84[ASN][1000 genomes]
rs10435868	0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs10448274	0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs10759624	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10817487	0.82[ASN][1000 genomes]
rs10981280	0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs10981288	0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs10981296	0.94[YRI][hapmap];0.82[EUR][1000 genomes]
rs10981329	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs10981438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10981890	0.86[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs11581	0.83[JPT][hapmap]
rs11791310	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs11998999	0.83[EUR][1000 genomes]
rs12004930	0.85[EUR][1000 genomes]
rs12005128	0.86[EUR][1000 genomes]
rs12235305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12235734	0.80[EUR][1000 genomes]
rs13297670	0.83[EUR][1000 genomes]
rs13298346	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs13299627	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13301357	0.90[EUR][1000 genomes]
rs13302699	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1544203	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1903635	0.89[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1947717	0.85[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs2169456	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs2219664	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2242187	0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2279114	0.82[ASN][1000 genomes]
rs2306097	0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs2493442	0.81[CHB][hapmap];0.89[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2493443	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2502644	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2615143	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2615145	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2795365	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818238	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818239	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2818243	0.96[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3214072	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34382632	0.84[EUR][1000 genomes]
rs34955252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35609998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747489	0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs3747493	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3747496	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3802471	0.84[ASN][1000 genomes]
rs4237189	0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs4284138	0.88[EUR][1000 genomes]
rs4313271	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4366181	0.95[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs4523384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4523385	0.85[CHB][hapmap]
rs4554595	0.86[ASN][1000 genomes]
rs4743072	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743076	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]
rs4743077	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.86[ASN][1000 genomes]
rs4743084	0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs55694850	0.83[EUR][1000 genomes]
rs6478095	0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs6478131	0.82[ASN][1000 genomes]
rs713066	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72747776	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7470446	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs750674	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7856924	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7859665	0.84[JPT][hapmap]
rs7869959	0.80[EUR][1000 genomes]
rs9696167	0.83[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2795367	ANKRD18CP	cis	Thyroid	GTEx
rs2795367	VN1R51P	cis	Thyroid	GTEx

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100025800-100050200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100035000-100059600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:100036800-100052200	Weak transcription	Stomach Mucosa	stomach
4	chr9:100037200-100050200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:100037400-100047000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr9:100038200-100050600	Weak transcription	Esophagus	oesophagus
7	chr9:100038600-100047600	Weak transcription	HepG2	liver
8	chr9:100038800-100047200	Strong transcription	Liver	Liver
9	chr9:100038800-100050400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:100039000-100047000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:100039000-100047000	Strong transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:100039000-100050600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:100039000-100052800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:100039000-100053000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:100039000-100054200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:100039200-100052800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr9:100039200-100056400	Weak transcription	Small Intestine	intestine
18	chr9:100039600-100047200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:100039600-100047400	Strong transcription	Adipose Nuclei	Adipose
20	chr9:100039600-100055000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:100039600-100055600	Weak transcription	NH-A	brain
22	chr9:100039800-100047200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:100039800-100047200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr9:100039800-100048000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:100039800-100050400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr9:100039800-100051800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:100039800-100055600	Weak transcription	NHLF	lung
28	chr9:100040600-100047000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:100040800-100055600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:100041000-100050400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:100041200-100050600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:100041400-100047200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr9:100041400-100059600	Weak transcription	Fetal Brain Male	brain
34	chr9:100041600-100050000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr9:100041600-100052800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr9:100041800-100047600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:100041800-100049200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:100042200-100048200	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr9:100042600-100049000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:100043200-100050200	Weak transcription	Right Ventricle	heart
41	chr9:100043400-100050600	Weak transcription	Thymus	Thymus
42	chr9:100043600-100050000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr9:100043800-100049600	Weak transcription	Fetal Brain Female	brain
44	chr9:100043800-100050000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr9:100043800-100052800	Weak transcription	Hela-S3	cervix
46	chr9:100044000-100047800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr9:100044000-100049800	Weak transcription	Osteobl	bone
48	chr9:100044000-100050000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:100044000-100050200	Weak transcription	Brain Germinal Matrix	brain
50	chr9:100044000-100050400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links