The 2.0 version of rSNPBase

Variant report

Variant rs35609998
Chromosome Location chr9:100039736-100039737
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:100002000-100040400 Weak transcription Spleen Spleen
2 chr9:100013000-100040400 Weak transcription Brain Substantia Nigra brain
3 chr9:100024400-100040600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
4 chr9:100024400-100042600 Weak transcription Fetal Heart heart
5 chr9:100025800-100050200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr9:100031200-100039800 Weak transcription Lung lung
7 chr9:100033800-100039800 Weak transcription Dnd41 blood
8 chr9:100034200-100039800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr9:100034800-100039800 Weak transcription Fetal Kidney kidney
10 chr9:100034800-100040400 Weak transcription Fetal Brain Male brain
11 chr9:100035000-100059600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr9:100036200-100039800 Weak transcription Fetal Brain Female brain
13 chr9:100036400-100039800 Weak transcription Primary B cells from cord blood blood
14 chr9:100036400-100042600 Weak transcription Colonic Mucosa Colon
15 chr9:100036600-100039800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr9:100036800-100052200 Weak transcription Stomach Mucosa stomach
17 chr9:100037200-100050200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr9:100037400-100039800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr9:100037400-100039800 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr9:100037400-100047000 Strong transcription Fetal Muscle Trunk muscle
21 chr9:100037600-100039800 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr9:100037600-100039800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr9:100037600-100039800 Enhancers K562 blood
24 chr9:100037800-100039800 Enhancers HUES48 Cell Line embryonic stem cell
25 chr9:100037800-100046600 Strong transcription Stomach Smooth Muscle stomach
26 chr9:100038000-100039800 Weak transcription Placenta Amnion Placenta Amnion
27 chr9:100038000-100039800 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr9:100038000-100040000 Enhancers iPS-18 Cell Line embryonic stem cell
29 chr9:100038000-100040200 Weak transcription Thymus Thymus
30 chr9:100038000-100040400 Weak transcription Gastric stomach
31 chr9:100038200-100039800 Enhancers iPS-15b Cell Line embryonic stem cell
32 chr9:100038200-100039800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr9:100038200-100040000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr9:100038200-100040000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr9:100038200-100040400 Weak transcription Osteobl bone
36 chr9:100038200-100040600 Weak transcription Rectal Smooth Muscle rectum
37 chr9:100038200-100050600 Weak transcription Esophagus oesophagus
38 chr9:100038400-100039800 Enhancers iPS-20b Cell Line embryonic stem cell
39 chr9:100038400-100041800 Weak transcription Muscle Satellite Cultured Cells --
40 chr9:100038600-100039800 Enhancers H1 Cell Line embryonic stem cell
41 chr9:100038600-100039800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr9:100038600-100040200 Weak transcription Primary T helper naive cells fromperipheralblood blood
43 chr9:100038600-100040200 Weak transcription Primary T killer memory cells from peripheral blood blood
44 chr9:100038600-100040400 Weak transcription Brain Inferior Temporal Lobe brain
45 chr9:100038600-100040800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr9:100038600-100041400 Strong transcription Brain Cingulate Gyrus brain
47 chr9:100038600-100041400 Strong transcription Fetal Intestine Small intestine
48 chr9:100038600-100041600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
49 chr9:100038600-100042000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
50 chr9:100038600-100043800 Weak transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015