Variant report

Variant	rs4743072
Chromosome Location	chr9:100076081-100076082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100074180..100076957-chr9:100078582..100080442,2	MCF-7	breast:
2	chr9:100075658..100077639-chr9:100081939..100084520,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10122063	0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs10125198	0.96[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1037948	0.83[ASN][1000 genomes]
rs10435867	0.86[ASN][1000 genomes]
rs10435868	0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10448274	0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10759624	0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10817487	0.84[ASN][1000 genomes]
rs10981280	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10981288	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10981296	0.89[YRI][hapmap]
rs10981329	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs10981438	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981890	0.87[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap]
rs11581	0.86[JPT][hapmap]
rs11791310	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs12004930	0.81[EUR][1000 genomes]
rs12005128	0.82[EUR][1000 genomes]
rs12235305	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13298346	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs13299627	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13301357	0.86[EUR][1000 genomes]
rs13302699	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1544203	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1903635	0.81[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947717	0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2169456	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2219664	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2242187	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2279114	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2306097	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2493442	0.82[CHB][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2493443	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502644	0.82[CHB][hapmap];0.88[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615143	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615145	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2795365	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2795367	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2818238	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2818239	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2818243	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3214072	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34382632	0.80[EUR][1000 genomes]
rs34955252	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35609998	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3747489	0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3747493	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs3747496	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3802471	0.83[ASN][1000 genomes]
rs4237189	0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4284138	0.84[EUR][1000 genomes]
rs4313271	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4366181	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4523384	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4523385	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs4554595	0.85[ASN][1000 genomes]
rs4743076	0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4743077	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4743084	0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4743087	0.80[CEU][hapmap]
rs6478095	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6478131	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7020393	0.91[JPT][hapmap]
rs7042707	0.91[JPT][hapmap]
rs713066	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72747776	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7470446	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs750674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7856924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859665	0.82[ASN][1000 genomes]
rs9696167	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4743072	ANKRD18CP	cis	Thyroid	GTEx
rs4743072	VN1R51P	cis	Thyroid	GTEx

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100069400-100092800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:100069600-100094400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:100069800-100076600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:100069800-100077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:100069800-100086400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:100070000-100091400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:100070000-100093800	Weak transcription	Psoas Muscle	Psoas
8	chr9:100070000-100098000	Weak transcription	Small Intestine	intestine
9	chr9:100070000-100100200	Weak transcription	Fetal Heart	heart
10	chr9:100070000-100131400	Weak transcription	Fetal Kidney	kidney
11	chr9:100070200-100076800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:100070200-100092600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:100070200-100095000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:100070400-100076800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr9:100070400-100080600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:100070400-100083600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:100070400-100091800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr9:100070400-100092800	Weak transcription	Colonic Mucosa	Colon
19	chr9:100070400-100095200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr9:100070600-100078800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:100070600-100081800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr9:100070600-100089600	Weak transcription	Osteobl	bone
23	chr9:100070800-100076200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:100070800-100076400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr9:100071000-100076800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr9:100071000-100077400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:100071000-100094400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr9:100071200-100093000	Strong transcription	Stomach Smooth Muscle	stomach
29	chr9:100071400-100078400	Strong transcription	Colon Smooth Muscle	Colon
30	chr9:100071400-100083800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr9:100071600-100077800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr9:100071600-100079600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr9:100071600-100081000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:100071600-100081200	Strong transcription	Fetal Brain Female	brain
35	chr9:100071600-100081400	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr9:100071600-100081600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:100071600-100084000	Strong transcription	Fetal Muscle Leg	muscle
38	chr9:100071600-100088800	Strong transcription	Brain Germinal Matrix	brain
39	chr9:100071600-100089200	Strong transcription	Fetal Intestine Small	intestine
40	chr9:100071600-100093000	Strong transcription	Fetal Stomach	stomach
41	chr9:100071600-100093400	Strong transcription	Brain Anterior Caudate	brain
42	chr9:100071600-100093800	Strong transcription	Brain Inferior Temporal Lobe	brain
43	chr9:100071600-100093800	Strong transcription	Ovary	ovary
44	chr9:100071600-100094600	Strong transcription	Brain Angular Gyrus	brain
45	chr9:100071800-100077400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr9:100071800-100078800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr9:100071800-100080400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr9:100071800-100081000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr9:100071800-100081400	Strong transcription	Fetal Intestine Large	intestine
50	chr9:100071800-100081600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links