Variant report

Variant	rs750674
Chromosome Location	chr9:100073367-100073368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100071352..100073895-chr9:100079850..100081811,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10122063	0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs10125198	0.96[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1037948	0.85[ASN][1000 genomes]
rs10435867	0.85[ASN][1000 genomes]
rs10435868	0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10448274	0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10759624	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10817487	0.83[ASN][1000 genomes]
rs10981280	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10981288	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs10981296	0.89[YRI][hapmap]
rs10981329	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs10981438	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10981890	0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs11581	0.91[JPT][hapmap]
rs11791310	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs12004930	0.81[EUR][1000 genomes]
rs12005128	0.82[EUR][1000 genomes]
rs12235305	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13298346	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs13299627	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13301357	0.86[EUR][1000 genomes]
rs13302699	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1544203	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1903635	0.86[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1947717	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2169456	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2219664	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2242187	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2279114	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2306097	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2493442	0.82[CHB][hapmap];0.82[JPT][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2493443	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2502644	0.82[CHB][hapmap];0.94[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2615143	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2615145	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2795365	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2795367	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2818238	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2818239	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2818243	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3214072	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34382632	0.80[EUR][1000 genomes]
rs34955252	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35609998	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3747489	0.96[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs3747493	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3747496	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3802471	0.85[ASN][1000 genomes]
rs4237189	0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4284138	0.84[EUR][1000 genomes]
rs4313271	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4366181	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4523384	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4523385	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4554595	0.86[ASN][1000 genomes]
rs4743072	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4743076	0.96[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4743077	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4743084	0.96[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4743087	0.80[CEU][hapmap]
rs6478095	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6478131	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7020393	0.86[JPT][hapmap]
rs7042707	0.87[JPT][hapmap]
rs713066	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72747776	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7470446	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7856924	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7859665	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs9696167	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs750674	ANKRD18CP	cis	Thyroid	GTEx
rs750674	VN1R51P	cis	Thyroid	GTEx

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100057000-100075000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr9:100057400-100075400	Weak transcription	Dnd41	blood
3	chr9:100068800-100074200	Weak transcription	Thymus	Thymus
4	chr9:100069400-100092800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:100069600-100094400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:100069800-100075400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:100069800-100076600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:100069800-100077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:100069800-100086400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:100070000-100074400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:100070000-100075400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:100070000-100076000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:100070000-100091400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:100070000-100093800	Weak transcription	Psoas Muscle	Psoas
15	chr9:100070000-100098000	Weak transcription	Small Intestine	intestine
16	chr9:100070000-100100200	Weak transcription	Fetal Heart	heart
17	chr9:100070000-100131400	Weak transcription	Fetal Kidney	kidney
18	chr9:100070200-100073800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:100070200-100076800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:100070200-100092600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr9:100070200-100095000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr9:100070400-100073400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:100070400-100073600	Weak transcription	Pancreas	Pancrea
24	chr9:100070400-100073800	Weak transcription	Gastric	stomach
25	chr9:100070400-100074000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:100070400-100074000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr9:100070400-100074200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:100070400-100074200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr9:100070400-100074200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr9:100070400-100075200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:100070400-100075600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr9:100070400-100075600	Weak transcription	Fetal Brain Male	brain
33	chr9:100070400-100076800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:100070400-100080600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:100070400-100083600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr9:100070400-100091800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr9:100070400-100092800	Weak transcription	Colonic Mucosa	Colon
38	chr9:100070400-100095200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr9:100070600-100078800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:100070600-100081800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr9:100070600-100089600	Weak transcription	Osteobl	bone
42	chr9:100070800-100076200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr9:100070800-100076400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:100071000-100074600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr9:100071000-100075200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr9:100071000-100076800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr9:100071000-100077400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:100071000-100094400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr9:100071200-100093000	Strong transcription	Stomach Smooth Muscle	stomach
50	chr9:100071400-100073400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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