Variant report

Variant	rs713066
Chromosome Location	chr9:100070810-100070811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100066231..100068104-chr9:100070294..100072563,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10122063	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs10125198	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1037948	0.83[ASN][1000 genomes]
rs10435867	0.86[ASN][1000 genomes]
rs10435868	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10448274	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10759624	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10817487	0.84[ASN][1000 genomes]
rs10981280	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10981288	0.93[ASW][hapmap];0.91[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs10981296	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs10981329	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10981438	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981890	0.87[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs11581	0.84[JPT][hapmap]
rs11791310	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs11998999	0.82[EUR][1000 genomes]
rs12004930	0.83[EUR][1000 genomes]
rs12005128	0.84[EUR][1000 genomes]
rs12235305	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13297670	0.82[EUR][1000 genomes]
rs13298346	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs13299627	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13301357	0.88[EUR][1000 genomes]
rs13302699	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1544203	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1903635	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947717	0.86[ASW][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2169456	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2219664	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2242187	0.93[ASW][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2279114	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2306097	1.00[ASW][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2493442	0.86[CHB][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2493443	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502644	0.86[CHB][hapmap];0.85[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615143	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615145	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2795365	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2795367	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2818238	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2818239	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2818243	0.93[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3214072	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34382632	0.82[EUR][1000 genomes]
rs34955252	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35609998	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3747489	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3747493	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs3747496	1.00[ASW][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3802471	0.83[ASN][1000 genomes]
rs4237189	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4284138	0.86[EUR][1000 genomes]
rs4313271	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4366181	0.93[ASW][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4523384	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4523385	0.81[ASW][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap]
rs4554595	0.85[ASN][1000 genomes]
rs4743072	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743076	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.84[ASN][1000 genomes]
rs4743077	0.93[ASW][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.85[ASN][1000 genomes]
rs4743084	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs55694850	0.81[EUR][1000 genomes]
rs6478095	1.00[ASW][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6478131	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7020393	0.90[JPT][hapmap]
rs7042707	0.90[JPT][hapmap]
rs72747776	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7470446	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs750674	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7856924	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859665	0.82[ASN][1000 genomes]
rs9696167	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs713066	VN1R51P	cis	Thyroid	GTEx
rs713066	LOC57653	cis	parietal	SCAN
rs713066	ANKRD18CP	cis	Thyroid	GTEx

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100057000-100075000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr9:100057400-100075400	Weak transcription	Dnd41	blood
3	chr9:100060200-100071600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:100068800-100071600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:100068800-100074200	Weak transcription	Thymus	Thymus
6	chr9:100069200-100071800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr9:100069400-100071600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:100069400-100092800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:100069600-100071800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:100069600-100094400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr9:100069800-100075400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:100069800-100076600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:100069800-100077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:100069800-100086400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:100070000-100071000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:100070000-100071600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr9:100070000-100071800	Weak transcription	Aorta	Aorta
18	chr9:100070000-100072000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:100070000-100072200	Weak transcription	Spleen	Spleen
20	chr9:100070000-100074400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:100070000-100075400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr9:100070000-100076000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr9:100070000-100091400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:100070000-100093800	Weak transcription	Psoas Muscle	Psoas
25	chr9:100070000-100098000	Weak transcription	Small Intestine	intestine
26	chr9:100070000-100100200	Weak transcription	Fetal Heart	heart
27	chr9:100070000-100131400	Weak transcription	Fetal Kidney	kidney
28	chr9:100070200-100071600	Weak transcription	Lung	lung
29	chr9:100070200-100071600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr9:100070200-100071800	Weak transcription	Left Ventricle	heart
31	chr9:100070200-100072000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr9:100070200-100073000	Weak transcription	Brain Hippocampus Middle	brain
33	chr9:100070200-100073800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:100070200-100076800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr9:100070200-100092600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr9:100070200-100095000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr9:100070400-100071000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr9:100070400-100071000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:100070400-100071000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:100070400-100071200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr9:100070400-100071400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr9:100070400-100071400	Weak transcription	Colon Smooth Muscle	Colon
43	chr9:100070400-100071400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr9:100070400-100071600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr9:100070400-100071600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr9:100070400-100071600	Weak transcription	Brain Angular Gyrus	brain
47	chr9:100070400-100071600	Weak transcription	Brain Anterior Caudate	brain
48	chr9:100070400-100071600	Weak transcription	Brain Germinal Matrix	brain
49	chr9:100070400-100071600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr9:100070400-100071600	Weak transcription	Brain Substantia Nigra	brain

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