Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10119245	0.81[EUR][1000 genomes]
rs10981209	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10981280	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10981288	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10981296	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10981329	0.80[AMR][1000 genomes]
rs11562326	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11791310	0.80[AMR][1000 genomes]
rs11794422	0.80[AMR][1000 genomes]
rs11998999	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12004930	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12235734	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13297670	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1857083	0.81[EUR][1000 genomes]
rs2374923	0.82[EUR][1000 genomes]
rs34382632	0.81[AMR][1000 genomes]
rs4014789	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4284138	0.80[AMR][1000 genomes]
rs4452918	0.82[EUR][1000 genomes]
rs55694850	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7850504	0.81[EUR][1000 genomes]
rs7855366	0.81[EUR][1000 genomes]
rs7855622	0.81[EUR][1000 genomes]
rs7868563	0.80[EUR][1000 genomes]
rs7868806	0.81[EUR][1000 genomes]
rs7869509	0.81[EUR][1000 genomes]
rs7869568	0.80[EUR][1000 genomes]
rs7869587	0.81[EUR][1000 genomes]
rs7869959	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931946	chr9:99895658-100005099	Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893607	chr9:99906545-99996548	Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893608	chr9:99906545-100005128	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv972433	chr9:99962059-99983443	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99968200-99973400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:99968200-99975200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:99968200-99976800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:99968200-99976800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:99968800-99973600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:99968800-99973600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:99969000-99973600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:99969000-99973600	Weak transcription	H1 Cell Line	embryonic stem cell

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