Variant report

Variant	rs4020125
Chromosome Location	chr14:78513914-78513915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10138710	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10150673	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1990793	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3861630	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4020107	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4020124	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903696	0.80[ASN][1000 genomes]
rs4903697	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4903698	0.88[ASN][1000 genomes]
rs7152567	0.91[ASN][1000 genomes]
rs8004771	0.80[ASN][1000 genomes]
rs8005420	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902108	chr14:78459047-78541015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78512800-78514000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78512800-78514200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:78513200-78514200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:78513400-78514000	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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