Variant report

Variant	rs8005420
Chromosome Location	chr14:78528722-78528723
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10138710	0.99[ASN][1000 genomes]
rs10150673	0.99[ASN][1000 genomes]
rs177216	0.80[CEU][hapmap];0.84[CHB][hapmap]
rs1990793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3861630	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4020107	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4020124	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4020125	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4903696	0.81[ASN][1000 genomes]
rs4903697	0.99[ASN][1000 genomes]
rs4903698	0.88[ASN][1000 genomes]
rs7152567	0.92[ASN][1000 genomes]
rs8004771	0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902108	chr14:78459047-78541015	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8005420	HEATR4	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78528000-78529200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr14:78528000-78529200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr14:78528000-78529200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:78528200-78529200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:78528400-78529200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr14:78528400-78529200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr14:78528400-78529200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr14:78528400-78529200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr14:78528600-78529000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:78528600-78529200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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