Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11088124	0.87[ASN][1000 genomes]
rs1292580	0.82[ASN][1000 genomes]
rs1292581	0.82[ASN][1000 genomes]
rs1292585	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1292588	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1292589	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1292594	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1292597	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs372539	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs376583	0.90[ASN][1000 genomes]
rs383431	0.90[ASN][1000 genomes]
rs407446	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4171	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs421894	0.82[ASN][1000 genomes]
rs445139	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs455658	0.88[ASN][1000 genomes]
rs456278	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs457036	0.89[ASN][1000 genomes]
rs458959	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs459837	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs460786	0.90[ASN][1000 genomes]
rs462418	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3434072	chr21:15994381-15998179	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15992200-15994600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
2	chr21:15992800-15994800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr21:15994400-16001600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr21:15994400-16001800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search: