Variant report

Variant	rs407446
Chromosome Location	chr21:15996276-15996277
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11088124	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11701328	0.84[ASN][1000 genomes]
rs1292580	0.92[ASN][1000 genomes]
rs1292581	0.92[ASN][1000 genomes]
rs1292585	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1292588	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1292589	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1292594	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1292597	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1350630	0.82[ASN][1000 genomes]
rs1977014	0.84[ASN][1000 genomes]
rs1977015	0.84[ASN][1000 genomes]
rs2125751	0.84[ASN][1000 genomes]
rs2822819	0.84[ASN][1000 genomes]
rs2822822	0.83[ASN][1000 genomes]
rs372539	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs376583	1.00[ASN][1000 genomes]
rs383431	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs402024	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4171	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421894	0.91[ASN][1000 genomes]
rs445139	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs455658	0.98[ASN][1000 genomes]
rs456278	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs456716	0.84[ASN][1000 genomes]
rs457036	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs458104	0.84[ASN][1000 genomes]
rs458959	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs459315	0.84[ASN][1000 genomes]
rs459837	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs460280	0.84[ASN][1000 genomes]
rs460643	0.84[ASN][1000 genomes]
rs460786	1.00[ASN][1000 genomes]
rs462339	0.84[ASN][1000 genomes]
rs462418	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs464381	0.84[ASN][1000 genomes]
rs464687	0.84[ASN][1000 genomes]
rs465674	0.84[ASN][1000 genomes]
rs466464	0.84[ASN][1000 genomes]
rs467055	0.84[ASN][1000 genomes]
rs7275267	0.84[ASN][1000 genomes]
rs7277131	0.84[ASN][1000 genomes]
rs7280842	0.84[ASN][1000 genomes]
rs8129100	0.88[ASN][1000 genomes]
rs989877	0.84[ASN][1000 genomes]
rs989878	0.84[ASN][1000 genomes]
rs9977944	0.84[ASN][1000 genomes]
rs9980813	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3434072	chr21:15994381-15998179	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15994400-16001600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr21:15994400-16001800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr21:15994600-16001600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr21:15994800-16001400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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