Variant report

Variant	rs8129100
Chromosome Location	chr21:15969294-15969295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15915303..15917955-chr21:15967480..15970218,2	K562	blood:
2	chr21:15964704..15966793-chr21:15967575..15971962,5	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11088124	0.85[ASN][1000 genomes]
rs11701328	0.88[JPT][hapmap]
rs1292580	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1292581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1292585	0.89[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1292588	0.86[ASN][1000 genomes]
rs1292589	0.84[ASN][1000 genomes]
rs1292594	0.88[ASN][1000 genomes]
rs1292597	0.88[ASN][1000 genomes]
rs1350630	0.88[JPT][hapmap]
rs1977015	0.88[JPT][hapmap]
rs2125751	0.88[JPT][hapmap]
rs2822822	0.88[JPT][hapmap]
rs372539	0.87[ASN][1000 genomes]
rs376583	0.88[ASN][1000 genomes]
rs383431	0.88[ASN][1000 genomes]
rs395625	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs407446	0.88[ASN][1000 genomes]
rs4171	0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs421894	0.88[JPT][hapmap]
rs445139	0.85[ASN][1000 genomes]
rs455658	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs455821	0.88[JPT][hapmap]
rs456278	0.88[ASN][1000 genomes]
rs457036	0.87[ASN][1000 genomes]
rs458104	0.88[JPT][hapmap]
rs458959	0.89[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs459837	0.86[ASN][1000 genomes]
rs460280	0.87[JPT][hapmap]
rs460643	0.81[JPT][hapmap]
rs460786	0.88[ASN][1000 genomes]
rs462418	0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs466008	0.88[JPT][hapmap]
rs466909	0.88[JPT][hapmap]
rs6516928	0.82[JPT][hapmap]
rs7275267	0.88[JPT][hapmap]
rs7277131	0.88[JPT][hapmap]
rs7280842	0.88[JPT][hapmap]
rs989877	0.88[JPT][hapmap]
rs9977944	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15965000-15970800	Weak transcription	Fetal Lung	lung
2	chr21:15966800-15970000	Weak transcription	Fetal Stomach	stomach
3	chr21:15969200-15972200	Weak transcription	K562	blood
4	chr21:15969200-15975000	Weak transcription	H9 Cell Line	embryonic stem cell

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