Variant report

Variant	rs6516928
Chromosome Location	chr21:16022416-16022417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11701328	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs1292581	0.87[JPT][hapmap]
rs1292585	0.81[CHB][hapmap]
rs1292594	0.80[ASN][1000 genomes]
rs1292597	0.80[ASN][1000 genomes]
rs1350630	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs1977014	0.97[ASN][1000 genomes]
rs1977015	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs2045586	0.90[CHB][hapmap]
rs2125751	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs2822819	0.97[ASN][1000 genomes]
rs2822822	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs376583	0.80[ASN][1000 genomes]
rs383431	0.80[ASN][1000 genomes]
rs388522	0.81[CHB][hapmap]
rs390482	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs395625	0.81[CHB][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap]
rs398972	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs407446	0.80[ASN][1000 genomes]
rs4171	0.81[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs421894	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs440600	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs450193	0.81[CHB][hapmap]
rs455547	0.81[CHB][hapmap]
rs455658	0.80[ASN][1000 genomes]
rs455821	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs456278	0.80[ASN][1000 genomes]
rs456716	0.97[ASN][1000 genomes]
rs458104	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs458959	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs459315	0.97[ASN][1000 genomes]
rs460280	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs460643	0.81[CHB][hapmap];0.87[JPT][hapmap];0.97[ASN][1000 genomes]
rs460786	0.80[ASN][1000 genomes]
rs462339	0.97[ASN][1000 genomes]
rs462418	0.81[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs464381	0.97[ASN][1000 genomes]
rs464687	0.97[ASN][1000 genomes]
rs465674	0.97[ASN][1000 genomes]
rs466008	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs466464	0.97[ASN][1000 genomes]
rs466909	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs467055	0.97[ASN][1000 genomes]
rs7275267	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs7277131	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs7280842	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs8129100	0.82[JPT][hapmap]
rs9808806	0.86[ASN][1000 genomes]
rs989877	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs989878	0.97[ASN][1000 genomes]
rs9977944	1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs9980813	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv3457	chr21:15996855-16042349	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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