Variant report

Variant	rs1292581
Chromosome Location	chr21:15984864-15984865
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SAMSN1-1	chr21:15984826-15984966	NONHSAT081167
2	lnc-SAMSN1-1	chr21:15984826-15985234	NONHSAT081166

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11088124	0.88[ASN][1000 genomes]
rs11701328	0.94[JPT][hapmap]
rs1292580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1292585	0.90[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1292588	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1292589	0.88[ASN][1000 genomes]
rs1292594	0.92[ASN][1000 genomes]
rs1292597	0.92[ASN][1000 genomes]
rs1350630	0.94[JPT][hapmap]
rs1977015	0.94[JPT][hapmap]
rs2125751	0.94[JPT][hapmap]
rs2822822	0.94[JPT][hapmap]
rs372539	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs376583	0.92[ASN][1000 genomes]
rs383431	0.92[ASN][1000 genomes]
rs390482	0.81[JPT][hapmap]
rs395625	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs398972	0.81[JPT][hapmap]
rs402024	0.82[ASN][1000 genomes]
rs407446	0.92[ASN][1000 genomes]
rs4171	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs421894	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs440600	0.81[JPT][hapmap]
rs445139	0.88[ASN][1000 genomes]
rs455658	0.89[CHB][hapmap];0.89[ASN][1000 genomes]
rs455821	0.94[JPT][hapmap]
rs456278	0.92[ASN][1000 genomes]
rs457036	0.90[ASN][1000 genomes]
rs458104	0.94[JPT][hapmap]
rs458959	0.90[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs459837	0.89[ASN][1000 genomes]
rs460280	0.93[JPT][hapmap]
rs460643	0.87[JPT][hapmap]
rs460786	0.92[ASN][1000 genomes]
rs462418	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs466008	0.94[JPT][hapmap]
rs466909	0.94[JPT][hapmap]
rs6516928	0.87[JPT][hapmap]
rs7275267	0.94[JPT][hapmap]
rs7277131	0.94[JPT][hapmap]
rs7280842	0.94[JPT][hapmap]
rs8129100	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs989877	0.94[JPT][hapmap]
rs9977944	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15980800-15986600	Weak transcription	K562	blood
2	chr21:15981000-15989400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr21:15983400-15986800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr21:15983600-15985000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr21:15983800-15989800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr21:15984800-15985600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr21:15984800-15985800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr21:15984800-15987600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr21:15984800-15988400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr21:15984800-15991800	Enhancers	HUES64 Cell Line	embryonic stem cell

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