Variant report

Variant	rs4053018
Chromosome Location	chr6:13176620-13176621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10948504	0.83[EUR][1000 genomes]
rs10948508	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11755284	0.83[EUR][1000 genomes]
rs11961234	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11963505	0.94[ASN][1000 genomes]
rs11968523	0.94[ASN][1000 genomes]
rs12192359	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13196010	0.83[EUR][1000 genomes]
rs13200409	0.82[EUR][1000 genomes]
rs16873671	0.98[ASN][1000 genomes]
rs4715138	0.82[EUR][1000 genomes]
rs4715139	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55637438	0.96[ASN][1000 genomes]
rs56160191	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61041084	1.00[ASN][1000 genomes]
rs6909143	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73371745	1.00[ASN][1000 genomes]
rs7758482	0.94[ASN][1000 genomes]
rs7771293	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13153400-13178000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:13153600-13178200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:13153600-13178200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:13153800-13184200	Weak transcription	Aorta	Aorta
5	chr6:13159200-13181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:13159600-13178400	Weak transcription	Right Ventricle	heart
7	chr6:13160000-13177400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:13163600-13183400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:13164800-13183400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:13164800-13184400	Weak transcription	Pancreas	Pancrea
11	chr6:13166600-13177800	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:13172600-13176800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:13172800-13191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:13173600-13176800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr6:13174600-13180400	Weak transcription	Fetal Brain Female	brain
16	chr6:13174800-13177800	Weak transcription	Brain Anterior Caudate	brain
17	chr6:13175400-13176800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:13175600-13176800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr6:13175600-13176800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:13175600-13177000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:13176400-13177800	Weak transcription	Left Ventricle	heart
22	chr6:13176400-13178400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:13176400-13183800	Weak transcription	Lung	lung
24	chr6:13176400-13191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:13176600-13176800	Enhancers	Fetal Heart	heart
26	chr6:13176600-13181400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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