Variant report

Variant	rs61041084
Chromosome Location	chr6:13178456-13178457
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10948508	0.96[ASN][1000 genomes]
rs11961234	0.94[ASN][1000 genomes]
rs11963505	0.94[ASN][1000 genomes]
rs11968523	0.94[ASN][1000 genomes]
rs12192359	0.92[ASN][1000 genomes]
rs16873671	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4053018	1.00[ASN][1000 genomes]
rs55637438	0.96[ASN][1000 genomes]
rs56160191	0.92[ASN][1000 genomes]
rs6909143	0.98[ASN][1000 genomes]
rs73371745	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758482	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7771293	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13153800-13184200	Weak transcription	Aorta	Aorta
2	chr6:13159200-13181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:13163600-13183400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:13164800-13183400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:13164800-13184400	Weak transcription	Pancreas	Pancrea
6	chr6:13172800-13191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:13174600-13180400	Weak transcription	Fetal Brain Female	brain
8	chr6:13176400-13183800	Weak transcription	Lung	lung
9	chr6:13176400-13191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:13176600-13181400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:13177400-13179200	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:13177800-13178600	Enhancers	Fetal Heart	heart
13	chr6:13177800-13178800	Enhancers	Left Ventricle	heart
14	chr6:13177800-13179200	Enhancers	Brain Hippocampus Middle	brain
15	chr6:13178000-13178800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr6:13178000-13179200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:13178000-13179200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:13178200-13178600	Enhancers	Brain Angular Gyrus	brain
19	chr6:13178200-13178800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr6:13178200-13178800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:13178200-13178800	Enhancers	Spleen	Spleen
22	chr6:13178200-13179000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:13178200-13179000	Enhancers	Brain Cingulate Gyrus	brain
24	chr6:13178200-13179000	Enhancers	Brain Substantia Nigra	brain
25	chr6:13178200-13179800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:13178400-13178600	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr6:13178400-13178800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr6:13178400-13178800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr6:13178400-13178800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:13178400-13178800	Enhancers	Adipose Nuclei	Adipose
31	chr6:13178400-13178800	Enhancers	Right Ventricle	heart
32	chr6:13178400-13178800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr6:13178400-13179000	Enhancers	Fetal Thymus	thymus
34	chr6:13178400-13184400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links