Variant report

Variant	rs6909143
Chromosome Location	chr6:13182190-13182191
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10948504	0.81[EUR][1000 genomes]
rs10948508	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11755284	0.80[EUR][1000 genomes]
rs11961234	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11963505	0.93[ASN][1000 genomes]
rs11968523	0.93[ASN][1000 genomes]
rs12192359	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13196010	0.81[EUR][1000 genomes]
rs13200409	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16873671	0.96[ASN][1000 genomes]
rs4053018	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715138	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4715139	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55637438	0.98[ASN][1000 genomes]
rs56160191	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61041084	0.98[ASN][1000 genomes]
rs73371745	0.98[ASN][1000 genomes]
rs7758482	0.96[ASN][1000 genomes]
rs7771293	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	nsv883450	chr6:13166341-13196011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13153800-13184200	Weak transcription	Aorta	Aorta
2	chr6:13163600-13183400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:13164800-13183400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:13164800-13184400	Weak transcription	Pancreas	Pancrea
5	chr6:13172800-13191800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:13176400-13183800	Weak transcription	Lung	lung
7	chr6:13176400-13191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:13178400-13184400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:13178600-13183800	Weak transcription	Fetal Heart	heart
10	chr6:13178800-13184000	Weak transcription	Right Ventricle	heart
11	chr6:13178800-13187200	Weak transcription	Spleen	Spleen
12	chr6:13178800-13191400	Weak transcription	Left Ventricle	heart
13	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:13179200-13184800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:13180400-13182200	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:13180800-13183600	Weak transcription	Brain Germinal Matrix	brain
17	chr6:13181000-13183000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:13181400-13184600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:13181600-13190600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:13181800-13182400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:13181800-13182800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr6:13181800-13182800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:13181800-13183000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:13182000-13182600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:13182000-13182800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:13182000-13183400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:13182000-13184800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:13182000-13184800	Enhancers	Brain Anterior Caudate	brain
29	chr6:13182000-13184800	Weak transcription	Stomach Mucosa	stomach
30	chr6:13182000-13187200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:13182000-13188000	Weak transcription	Fetal Stomach	stomach
32	chr6:13182000-13205400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:13182000-13211800	Weak transcription	Fetal Brain Female	brain
34	chr6:13182000-13212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain

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