Variant report

Variant	rs406335
Chromosome Location	chr5:118151019-118151020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10447237	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10447238	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10447266	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241476	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12109252	0.81[YRI][hapmap]
rs12187606	1.00[CHB][hapmap]
rs12659444	0.88[CEU][hapmap]
rs13166967	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1448479	1.00[CHB][hapmap]
rs17132673	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144708	0.81[EUR][1000 genomes]
rs17144714	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144715	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs17144716	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs17144806	1.00[CHB][hapmap]
rs1864109	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081957	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099092	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115301	0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115302	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2162888	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813297	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813298	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs383585	1.00[ASN][1000 genomes]
rs386288	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4895183	1.00[CHB][hapmap]
rs4895184	0.82[CHB][hapmap]
rs4895353	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895354	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55821851	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55876313	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56004980	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs581887	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635083	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6871241	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs6874109	1.00[CHB][hapmap]
rs6881583	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234502	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236920	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709381	0.92[EUR][1000 genomes]
rs822743	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs849728	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv882769	chr5:118088385-118154368	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118127000-118160000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:118143400-118178200	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links