Variant report

Variant	rs4075733
Chromosome Location	chr9:96624645-96624646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10122041	0.92[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10123836	0.85[CHB][hapmap];0.88[YRI][hapmap]
rs10821229	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3957506	0.80[ASN][1000 genomes]
rs3996254	0.86[ASN][1000 genomes]
rs4354374	0.85[CHB][hapmap]
rs4422827	0.83[AMR][1000 genomes]
rs4428726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744287	0.81[ASW][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.91[MEX][hapmap];0.88[YRI][hapmap];0.80[ASN][1000 genomes]
rs57882762	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893588	chr9:96620419-96668352	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4075733	ECM2	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96619800-96626000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:96623400-96626800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:96623600-96626000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:96623800-96624800	Bivalent Enhancer	Fetal Stomach	stomach
5	chr9:96623800-96625000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:96624200-96624800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr9:96624400-96631400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:96624600-96625600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:96624600-96626000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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