Variant report

Variant	rs3996254
Chromosome Location	chr9:96591239-96591240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10122041	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10123836	0.92[CEU][hapmap];0.93[CHB][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10761282	0.87[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10821229	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3957506	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4075733	0.92[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.86[ASN][1000 genomes]
rs4354374	0.83[CEU][hapmap];0.93[CHB][hapmap];0.89[ASN][1000 genomes]
rs4428726	0.90[ASN][1000 genomes]
rs4744287	0.96[CEU][hapmap];0.92[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57882762	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7869328	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1824724	chr9:96582360-96598551	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96590200-96591400	Bivalent Enhancer	Fetal Muscle Leg	muscle
2	chr9:96590200-96592000	Bivalent Enhancer	Fetal Stomach	stomach
3	chr9:96590200-96593000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr9:96590200-96593200	Enhancers	Fetal Lung	lung
5	chr9:96590600-96591800	Weak transcription	Gastric	stomach
6	chr9:96590600-96594800	Weak transcription	Spleen	Spleen
7	chr9:96590800-96591600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:96590800-96592400	Enhancers	Stomach Smooth Muscle	stomach
9	chr9:96590800-96592800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:96591000-96591400	Weak transcription	Ovary	ovary
11	chr9:96591000-96592200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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