Variant report

Variant	rs7869328
Chromosome Location	chr9:96588782-96588783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10122041	0.92[CEU][hapmap];0.93[CHB][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10123836	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10761282	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821229	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3957506	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3996254	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4075733	0.85[CHB][hapmap]
rs4354374	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4428726	0.83[ASN][1000 genomes]
rs4744287	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57882762	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1824724	chr9:96582360-96598551	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96587800-96589600	Enhancers	Stomach Smooth Muscle	stomach
2	chr9:96588400-96588800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:96588400-96589200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96588400-96589400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:96588400-96590200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr9:96588400-96590200	Bivalent Enhancer	Placenta	Placenta
7	chr9:96588600-96588800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:96588600-96588800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
9	chr9:96588600-96588800	ZNF genes & repeats	Pancreas	Pancrea
10	chr9:96588600-96589400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr9:96588600-96589800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:96588600-96590200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr9:96588600-96590600	Bivalent Enhancer	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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