Variant report

Variant	rs4428726
Chromosome Location	chr9:96623559-96623560
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96618460..96620840-chr9:96622073..96624809,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231990	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10122041	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10123836	0.82[ASN][1000 genomes]
rs10821229	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3957506	0.85[ASN][1000 genomes]
rs3996254	0.90[ASN][1000 genomes]
rs4075733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4354374	0.80[ASN][1000 genomes]
rs4422827	0.83[AMR][1000 genomes]
rs4744287	0.85[ASN][1000 genomes]
rs57882762	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7869328	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893588	chr9:96620419-96668352	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96619800-96626000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:96622800-96623600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr9:96622800-96623600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr9:96622800-96623600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:96622800-96623600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr9:96622800-96623600	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr9:96622800-96623800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr9:96622800-96623800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
9	chr9:96623000-96623600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:96623000-96623600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
11	chr9:96623000-96623600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:96623000-96623600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
13	chr9:96623000-96623600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
14	chr9:96623000-96623600	Bivalent/Poised TSS	Right Ventricle	heart
15	chr9:96623000-96623800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:96623000-96624200	Bivalent Enhancer	Fetal Brain Male	brain
17	chr9:96623200-96623600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:96623200-96623600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:96623400-96623600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr9:96623400-96623600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:96623400-96623600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
22	chr9:96623400-96623600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:96623400-96623600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
24	chr9:96623400-96623600	Bivalent Enhancer	Fetal Intestine Small	intestine
25	chr9:96623400-96623600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
26	chr9:96623400-96623600	Bivalent Enhancer	Left Ventricle	heart
27	chr9:96623400-96623600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
28	chr9:96623400-96623800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
29	chr9:96623400-96626800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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