Variant report

Variant	rs4077776
Chromosome Location	chr4:158929598-158929599
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:158924817..158927091-chr4:158928943..158930898,2	MCF-7	breast:
2	chr4:158929309..158930813-chr4:159080640..159082644,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164125	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10003459	0.96[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs10005901	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10027000	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10049927	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13137826	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28635553	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4072170	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4077777	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4388135	0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs4487405	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4504305	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4521391	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4574459	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4615226	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4631100	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4691447	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4691460	0.87[CHB][hapmap]
rs6536298	0.81[CEU][hapmap]
rs66490968	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6814979	0.92[CEU][hapmap];0.94[CHB][hapmap]
rs6830475	0.87[CHB][hapmap]
rs6833295	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs6843728	0.96[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs6847800	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848159	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7657303	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7673290	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7682867	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7692254	0.84[CEU][hapmap];0.94[CHB][hapmap]
rs9968557	0.92[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap]
rs9991381	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158913800-158930000	Weak transcription	Right Atrium	heart
2	chr4:158922600-158930000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:158923800-158929800	Weak transcription	Left Ventricle	heart
4	chr4:158923800-158939400	Weak transcription	HepG2	liver
5	chr4:158925400-158930200	Enhancers	Rectal Smooth Muscle	rectum
6	chr4:158925600-158930600	Enhancers	Colon Smooth Muscle	Colon
7	chr4:158926000-158930400	Enhancers	HSMMtube	muscle
8	chr4:158926000-158938800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:158926600-158931000	Enhancers	HUVEC	blood vessel
10	chr4:158927200-158929800	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:158927600-158930400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr4:158927600-158933600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:158928000-158933200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:158928200-158930400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:158928400-158929800	Weak transcription	Fetal Stomach	stomach
16	chr4:158928400-158930200	Enhancers	Adipose Nuclei	Adipose
17	chr4:158928400-158930400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:158928400-158930600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:158928400-158936200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:158928600-158930000	Enhancers	Fetal Kidney	kidney
21	chr4:158928800-158930200	Enhancers	Osteobl	bone
22	chr4:158928800-158930400	Weak transcription	Brain Substantia Nigra	brain
23	chr4:158928800-158930600	Enhancers	NH-A	brain
24	chr4:158928800-158932600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr4:158929000-158929600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:158929000-158929800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr4:158929000-158929800	Weak transcription	Brain Anterior Caudate	brain
28	chr4:158929000-158929800	Weak transcription	Ovary	ovary
29	chr4:158929000-158929800	Weak transcription	HSMM	muscle
30	chr4:158929000-158930000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:158929000-158930000	Weak transcription	Aorta	Aorta
32	chr4:158929200-158930200	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr4:158929400-158929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr4:158929400-158930200	Enhancers	Skeletal Muscle Male	skeletal muscle

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