Variant report

Variant	rs4077777
Chromosome Location	chr4:158928654-158928655
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:158923730..158926268-chr4:158927220..158929131,2	MCF-7	breast:
2	chr4:158927162..158929006-chr4:158931620..158933228,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10002472	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10049927	0.83[EUR][1000 genomes]
rs13137826	0.83[EUR][1000 genomes]
rs28635553	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4077776	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4307005	0.83[ASN][1000 genomes]
rs4464607	0.83[ASN][1000 genomes]
rs4504305	0.80[EUR][1000 genomes]
rs4521391	0.83[EUR][1000 genomes]
rs4574459	0.83[EUR][1000 genomes]
rs4631100	0.82[EUR][1000 genomes]
rs4637451	0.83[ASN][1000 genomes]
rs58762368	0.86[ASN][1000 genomes]
rs62335339	0.86[ASN][1000 genomes]
rs62335341	0.84[ASN][1000 genomes]
rs62335345	0.81[ASN][1000 genomes]
rs62335346	0.83[ASN][1000 genomes]
rs6815131	0.84[ASN][1000 genomes]
rs6827475	0.83[ASN][1000 genomes]
rs6847800	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72967836	0.86[ASN][1000 genomes]
rs7657303	0.82[EUR][1000 genomes]
rs7673290	0.83[EUR][1000 genomes]
rs7682867	0.83[EUR][1000 genomes]
rs9991381	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158913800-158930000	Weak transcription	Right Atrium	heart
2	chr4:158922600-158930000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:158922800-158929200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr4:158923800-158929800	Weak transcription	Left Ventricle	heart
5	chr4:158923800-158939400	Weak transcription	HepG2	liver
6	chr4:158925400-158930200	Enhancers	Rectal Smooth Muscle	rectum
7	chr4:158925600-158930600	Enhancers	Colon Smooth Muscle	Colon
8	chr4:158926000-158930400	Enhancers	HSMMtube	muscle
9	chr4:158926000-158938800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:158926200-158928800	Enhancers	Fetal Heart	heart
11	chr4:158926600-158931000	Enhancers	HUVEC	blood vessel
12	chr4:158927200-158928800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:158927200-158929800	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:158927600-158929000	Enhancers	Brain Anterior Caudate	brain
15	chr4:158927600-158929000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:158927600-158930400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr4:158927600-158933600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:158927800-158928800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:158927800-158928800	Enhancers	Brain Substantia Nigra	brain
20	chr4:158927800-158928800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:158928000-158929000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:158928000-158933200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:158928200-158929000	Enhancers	Ovary	ovary
24	chr4:158928200-158929000	Enhancers	HSMM	muscle
25	chr4:158928200-158929400	Enhancers	Brain Hippocampus Middle	brain
26	chr4:158928200-158930400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:158928400-158928800	Enhancers	Primary hematopoietic stem cells	blood
28	chr4:158928400-158929200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr4:158928400-158929800	Weak transcription	Fetal Stomach	stomach
30	chr4:158928400-158930200	Enhancers	Adipose Nuclei	Adipose
31	chr4:158928400-158930400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr4:158928400-158930600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:158928400-158936200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:158928600-158930000	Enhancers	Fetal Kidney	kidney

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