Variant report

Variant	rs7682867
Chromosome Location	chr4:158947887-158947888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10003459	0.96[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap]
rs10005901	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10027000	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10049927	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10517684	0.82[JPT][hapmap]
rs10857307	0.82[JPT][hapmap]
rs10857308	0.82[JPT][hapmap]
rs12504989	0.82[JPT][hapmap]
rs12511578	0.82[JPT][hapmap]
rs13126694	0.81[CHB][hapmap]
rs13137826	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17036918	0.82[JPT][hapmap]
rs17036921	0.82[JPT][hapmap]
rs28514324	0.80[ASN][1000 genomes]
rs28635553	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4072170	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4077776	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4077777	0.83[EUR][1000 genomes]
rs4129400	0.82[JPT][hapmap]
rs4388135	0.89[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap]
rs4460050	0.82[JPT][hapmap]
rs4487405	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4504305	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4521391	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4574459	0.96[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4615226	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4631100	0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4691447	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4691449	0.82[JPT][hapmap]
rs4691452	0.80[ASN][1000 genomes]
rs4691460	0.94[CHB][hapmap]
rs6536298	0.81[CEU][hapmap];0.82[JPT][hapmap]
rs66490968	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6814979	0.92[CEU][hapmap];0.88[CHB][hapmap]
rs6830475	0.94[CHB][hapmap]
rs6833295	0.89[CEU][hapmap];0.94[CHB][hapmap]
rs6843728	0.96[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap]
rs6847800	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6848159	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7656059	0.80[ASN][1000 genomes]
rs7657303	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7673290	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7692254	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs9968557	0.92[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap]
rs9991381	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993476	chr4:158550643-159202015	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1030124	chr4:158758675-159251140	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv881288	chr4:158891733-159028080	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:158939800-158955200	Weak transcription	Ovary	ovary
2	chr4:158940000-158950200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:158947200-158954600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:158947400-158948000	Weak transcription	Right Atrium	heart
5	chr4:158947600-158948200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:158947600-158948200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:158947800-158948000	ZNF genes & repeats	Fetal Intestine Small	intestine

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