Variant report

Variant	rs4085154
Chromosome Location	chr1:216858013-216858014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10127480	0.94[GIH][hapmap];0.83[AMR][1000 genomes]
rs10779275	0.83[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes]
rs10863264	0.82[AMR][1000 genomes]
rs12047925	0.83[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes]
rs2813693	0.92[CEU][hapmap];0.90[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2813705	0.86[AFR][1000 genomes]
rs2820883	0.81[YRI][hapmap]
rs3862956	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4846620	0.83[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes]
rs4846649	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
2	chr1:216840200-216863600	Weak transcription	Fetal Intestine Small	intestine
3	chr1:216844000-216860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:216844200-216861000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:216850800-216860000	Weak transcription	Left Ventricle	heart
6	chr1:216851000-216866000	Weak transcription	Placenta	Placenta
7	chr1:216854000-216860000	Weak transcription	Pancreas	Pancrea
8	chr1:216855600-216860800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:216856200-216859200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr1:216856400-216859200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:216856400-216859200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:216856400-216869800	Weak transcription	Psoas Muscle	Psoas
13	chr1:216856600-216858800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:216856600-216860000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:216857600-216859000	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links