Variant report

Variant	rs10127480
Chromosome Location	chr1:216844423-216844424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10442690	0.83[AFR][1000 genomes]
rs10779274	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs10779275	0.94[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10863263	0.88[AFR][1000 genomes]
rs10863264	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11117655	0.83[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs12047925	0.96[CEU][hapmap];0.82[CHB][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1416613	0.82[ASW][hapmap];0.87[LWK][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes]
rs2813693	0.83[JPT][hapmap]
rs3862956	0.83[AMR][1000 genomes]
rs4085154	0.94[GIH][hapmap];0.83[AMR][1000 genomes]
rs4846620	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4846649	0.94[GIH][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes]
rs946465	0.82[ASW][hapmap];0.85[LWK][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs946466	0.82[ASW][hapmap];0.85[LWK][hapmap];0.81[MKK][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10127480	CENPF	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
6	chr1:216838400-216850000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:216840000-216850600	Weak transcription	Gastric	stomach
8	chr1:216840200-216863600	Weak transcription	Fetal Intestine Small	intestine
9	chr1:216840400-216853600	Weak transcription	Fetal Intestine Large	intestine
10	chr1:216842200-216855400	Weak transcription	Fetal Stomach	stomach
11	chr1:216844000-216860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:216844200-216849200	Weak transcription	Left Ventricle	heart
13	chr1:216844200-216861000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:216844400-216848200	Weak transcription	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links