Variant report

Variant	rs4846649
Chromosome Location	chr1:216860548-216860549
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10127480	0.94[GIH][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes]
rs10779275	0.83[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap];0.81[AMR][1000 genomes]
rs12047925	0.83[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes]
rs2813693	0.92[CEU][hapmap];0.85[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2813705	0.87[AFR][1000 genomes]
rs2820883	0.81[YRI][hapmap]
rs3862956	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4085154	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4846620	0.83[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216840200-216863600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:216844200-216861000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:216851000-216866000	Weak transcription	Placenta	Placenta
4	chr1:216855600-216860800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:216856400-216869800	Weak transcription	Psoas Muscle	Psoas
6	chr1:216859800-216861800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:216859800-216863600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:216860000-216860600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:216860000-216860600	Enhancers	Left Ventricle	heart
10	chr1:216860000-216860600	Enhancers	Pancreas	Pancrea
11	chr1:216860000-216860800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:216860000-216860800	Enhancers	Fetal Brain Male	brain
13	chr1:216860000-216861200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr1:216860000-216861200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:216860000-216861200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr1:216860000-216862000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:216860000-216862000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr1:216860200-216860800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:216860200-216860800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr1:216860200-216860800	Bivalent Enhancer	Brain Germinal Matrix	brain
21	chr1:216860200-216861000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:216860200-216861000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr1:216860200-216861000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr1:216860200-216861200	Flanking Active TSS	Fetal Heart	heart
25	chr1:216860400-216860800	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr1:216860400-216860800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr1:216860400-216860800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr1:216860400-216860800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:216860400-216860800	Active TSS	Right Ventricle	heart
30	chr1:216860400-216861000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:216860400-216861000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr1:216860400-216861000	Active TSS	Right Atrium	heart
33	chr1:216860400-216861200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr1:216860400-216861200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr1:216860400-216861600	Active TSS	Fetal Brain Female	brain
36	chr1:216860400-216862000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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