Variant report

Variant	rs10442690
Chromosome Location	chr1:216839504-216839505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10127480	0.83[AFR][1000 genomes]
rs10442689	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10779274	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10779275	0.89[AFR][1000 genomes]
rs10863263	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10863264	0.82[AFR][1000 genomes]
rs11117655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12047925	0.91[AFR][1000 genomes]
rs12728283	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1416612	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1416613	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1953520	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4426040	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4846620	0.86[AFR][1000 genomes]
rs4846631	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs730968	0.84[ASN][1000 genomes]
rs946465	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946466	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216834200-216844000	Weak transcription	Left Ventricle	heart
6	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
7	chr1:216835800-216839600	Weak transcription	Fetal Intestine Large	intestine
8	chr1:216836600-216839600	Weak transcription	Placenta	Placenta
9	chr1:216837600-216839800	Weak transcription	Gastric	stomach
10	chr1:216838200-216840600	Enhancers	Hela-S3	cervix
11	chr1:216838400-216843800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:216838400-216850000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:216839400-216840200	Enhancers	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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