Variant report

Variant	rs10442689
Chromosome Location	chr1:216839067-216839068
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10442690	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10746365	0.87[CEU][hapmap]
rs10779274	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10863263	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11117655	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12042592	0.89[CHB][hapmap]
rs12728283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1339341	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1339344	0.85[YRI][hapmap]
rs1416612	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1416613	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17043567	0.89[CHB][hapmap]
rs1856520	0.88[CEU][hapmap]
rs1856521	0.87[CEU][hapmap]
rs1932494	0.83[ASN][1000 genomes]
rs1948639	0.83[ASN][1000 genomes]
rs1953520	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2211118	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2813705	0.97[ASN][1000 genomes]
rs2820884	0.88[CEU][hapmap];0.80[AMR][1000 genomes]
rs2820885	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3900668	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3929878	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4426040	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4846631	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs730968	0.88[CEU][hapmap]
rs946465	1.00[CEU][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs946466	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs946467	0.88[CEU][hapmap];0.84[CHB][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216834200-216844000	Weak transcription	Left Ventricle	heart
6	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
7	chr1:216835800-216839600	Weak transcription	Fetal Intestine Large	intestine
8	chr1:216836000-216839400	Weak transcription	Fetal Intestine Small	intestine
9	chr1:216836600-216839600	Weak transcription	Placenta	Placenta
10	chr1:216837600-216839800	Weak transcription	Gastric	stomach
11	chr1:216838200-216840600	Enhancers	Hela-S3	cervix
12	chr1:216838400-216843800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:216838400-216850000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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