Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10442689	0.87[CEU][hapmap]
rs10746365	1.00[CEU][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10779274	0.87[CEU][hapmap];0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs11117655	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs12728283	0.87[CEU][hapmap]
rs1339341	0.80[CEU][hapmap]
rs1339344	0.82[CEU][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1416612	0.87[CEU][hapmap]
rs1416613	0.87[CEU][hapmap];0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs1856520	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1932494	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1948639	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1953520	0.87[CEU][hapmap];0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs2789725	0.93[CEU][hapmap]
rs2820883	0.93[CEU][hapmap]
rs2820884	0.80[CEU][hapmap]
rs4426040	0.87[CEU][hapmap]
rs4846631	0.87[CEU][hapmap]
rs730968	1.00[CEU][hapmap];0.80[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs946465	0.87[CEU][hapmap]
rs946466	0.87[CEU][hapmap];0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs946467	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216775200-216835400	Weak transcription	Fetal Intestine Small	intestine
2	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
3	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
4	chr1:216818600-216835000	Weak transcription	Fetal Intestine Large	intestine
5	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
6	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:216827400-216834000	Weak transcription	Left Ventricle	heart
8	chr1:216827800-216836000	Weak transcription	Placenta	Placenta
9	chr1:216832800-216833000	Enhancers	Gastric	stomach

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