Variant report

Variant	rs1932494
Chromosome Location	chr1:216840996-216840997
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10442689	0.83[ASN][1000 genomes]
rs10746365	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12728283	0.81[ASN][1000 genomes]
rs1339344	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1856520	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1856521	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1948639	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2211118	0.80[ASN][1000 genomes]
rs2813705	0.80[ASN][1000 genomes]
rs2820885	0.80[ASN][1000 genomes]
rs3929878	0.80[ASN][1000 genomes]
rs730968	0.96[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216834200-216844000	Weak transcription	Left Ventricle	heart
6	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
7	chr1:216838400-216843800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:216838400-216850000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:216839600-216841400	Enhancers	Placenta	Placenta
10	chr1:216840000-216850600	Weak transcription	Gastric	stomach
11	chr1:216840200-216863600	Weak transcription	Fetal Intestine Small	intestine
12	chr1:216840400-216853600	Weak transcription	Fetal Intestine Large	intestine
13	chr1:216840600-216843800	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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