Variant report

Variant	rs2211118
Chromosome Location	chr1:216864218-216864219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:216862083..216864783-chr1:216865625..216868400,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10442689	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10746365	0.87[GIH][hapmap]
rs10779274	0.87[CEU][hapmap]
rs12042592	0.89[CHB][hapmap]
rs12728283	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1339341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1416612	0.87[CEU][hapmap];0.83[CHB][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes]
rs1416613	0.87[CEU][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap]
rs17043567	0.89[CHB][hapmap]
rs1932494	0.80[ASN][1000 genomes]
rs1948639	0.82[ASN][1000 genomes]
rs1953520	0.87[CEU][hapmap]
rs2789725	0.87[CEU][hapmap];0.96[GIH][hapmap];0.81[TSI][hapmap]
rs2813699	0.87[EUR][1000 genomes]
rs2813705	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820883	0.93[ASW][hapmap];0.87[CEU][hapmap];0.96[GIH][hapmap];0.81[TSI][hapmap]
rs2820884	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2820885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3900668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3929878	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4426040	0.87[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap]
rs4846631	0.87[CEU][hapmap];1.00[GIH][hapmap];0.84[TSI][hapmap]
rs946465	0.87[CEU][hapmap];0.80[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.84[TSI][hapmap]
rs946466	0.87[CEU][hapmap];0.80[TSI][hapmap]
rs946467	0.83[CHB][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2211118	TGFB2	cis	parietal	SCAN
rs2211118	ANGEL2	cis	parietal	SCAN
rs2211118	TGFB2	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216851000-216866000	Weak transcription	Placenta	Placenta
2	chr1:216856400-216869800	Weak transcription	Psoas Muscle	Psoas
3	chr1:216864000-216873200	Weak transcription	Fetal Heart	heart
4	chr1:216864200-216864600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:216864200-216864600	Enhancers	Fetal Intestine Large	intestine
6	chr1:216864200-216864600	Enhancers	Fetal Intestine Small	intestine

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