Variant report

Variant	rs10746365
Chromosome Location	chr1:216836051-216836052
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10442689	0.87[CEU][hapmap]
rs10779274	0.87[CEU][hapmap]
rs11572672	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs12034601	0.93[CHB][hapmap];0.89[CHD][hapmap];0.90[MEX][hapmap]
rs12728283	0.87[CEU][hapmap]
rs1339344	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416612	0.87[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.93[YRI][hapmap]
rs1416613	0.87[CEU][hapmap];1.00[GIH][hapmap]
rs17043513	0.93[CHB][hapmap];0.89[CHD][hapmap]
rs1856520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1856521	1.00[CEU][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1932494	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1948639	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1953520	0.87[CEU][hapmap]
rs2211118	0.87[GIH][hapmap]
rs2789725	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.95[ASN][1000 genomes]
rs2820883	0.86[CEU][hapmap];0.93[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.93[ASN][1000 genomes]
rs2820884	0.82[CHB][hapmap]
rs3900668	0.87[GIH][hapmap]
rs4426040	0.87[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap]
rs4846631	0.87[CEU][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap]
rs730968	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs946465	0.87[CEU][hapmap];1.00[GIH][hapmap]
rs946466	0.87[CEU][hapmap]
rs946467	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216833800-216838200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:216834200-216844000	Weak transcription	Left Ventricle	heart
7	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
8	chr1:216835600-216836200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:216835800-216836200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:216835800-216836800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:216835800-216839600	Weak transcription	Fetal Intestine Large	intestine
12	chr1:216836000-216836400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:216836000-216836600	Enhancers	Placenta	Placenta
14	chr1:216836000-216839400	Weak transcription	Fetal Intestine Small	intestine

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