Variant report

Variant	rs1339344
Chromosome Location	chr1:216833926-216833927
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10442689	0.85[YRI][hapmap]
rs10746365	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572672	0.93[CHB][hapmap]
rs12034601	0.86[CHB][hapmap]
rs17043513	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1856520	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1856521	0.82[CEU][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1932494	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1948639	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2789725	0.93[CHB][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes]
rs2820883	0.85[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs730968	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs946467	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216775200-216835400	Weak transcription	Fetal Intestine Small	intestine
2	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
3	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
4	chr1:216818600-216835000	Weak transcription	Fetal Intestine Large	intestine
5	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
6	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:216827400-216834000	Weak transcription	Left Ventricle	heart
8	chr1:216827800-216836000	Weak transcription	Placenta	Placenta
9	chr1:216833800-216838200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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