Variant report
| Variant | rs4086684 |
|---|---|
| Chromosome Location | chr5:57692320-57692321 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:57684855..57687554-chr5:57691257..57692769,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs2408948 | 0.95[EUR][1000 genomes] |
| rs27213 | 0.94[EUR][1000 genomes] |
| rs27603 | 0.94[EUR][1000 genomes] |
| rs35491600 | 0.81[AFR][1000 genomes] |
| rs3846535 | 0.81[AFR][1000 genomes] |
| rs4099273 | 0.81[AFR][1000 genomes] |
| rs4699923 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs889303 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs905199 | 0.81[AFR][1000 genomes] |
| rs930602 | 0.96[EUR][1000 genomes] |
| rs986459 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv4842 | chr5:57653257-57694850 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv508358 | chr5:57673230-57709684 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1032746 | chr5:57675471-57701548 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv989305 | chr5:57678008-57695255 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1028460 | chr5:57691003-57719435 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:57690800-57694400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
