Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10065355	0.98[ASN][1000 genomes]
rs10513142	0.94[EUR][1000 genomes]
rs11739229	0.95[EUR][1000 genomes]
rs11742895	0.95[EUR][1000 genomes]
rs11745076	0.95[EUR][1000 genomes]
rs11748388	0.92[EUR][1000 genomes]
rs13157907	0.92[EUR][1000 genomes]
rs13159047	0.95[EUR][1000 genomes]
rs151888	0.92[EUR][1000 genomes]
rs154476	0.92[EUR][1000 genomes]
rs17709103	0.95[EUR][1000 genomes]
rs17765852	0.95[EUR][1000 genomes]
rs181954	0.92[EUR][1000 genomes]
rs27210	0.94[EUR][1000 genomes]
rs27211	0.94[EUR][1000 genomes]
rs27840	0.94[EUR][1000 genomes]
rs34434884	0.95[EUR][1000 genomes]
rs35263833	0.94[EUR][1000 genomes]
rs35491600	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35988720	0.92[EUR][1000 genomes]
rs36120901	0.94[EUR][1000 genomes]
rs36179294	0.94[EUR][1000 genomes]
rs37533	0.90[EUR][1000 genomes]
rs3846535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4086684	0.81[AFR][1000 genomes]
rs4099272	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699923	0.81[AFR][1000 genomes]
rs58174847	0.94[EUR][1000 genomes]
rs71624201	0.94[EUR][1000 genomes]
rs889303	0.81[AFR][1000 genomes]
rs905199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931745	0.95[EUR][1000 genomes]
rs986459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1032746	chr5:57675471-57701548	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv989305	chr5:57678008-57695255	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1028460	chr5:57691003-57719435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57690800-57694400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search: