Variant report

Variant	rs37533
Chromosome Location	chr5:57647874-57647875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10513142	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11739229	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11740115	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11742895	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11745076	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11748388	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13157907	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13159047	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1469090	0.88[AFR][1000 genomes]
rs151868	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs151888	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs154476	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs154670	0.82[JPT][hapmap];0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs154671	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs154673	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17709103	0.85[CEU][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17765852	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs181745	0.84[JPT][hapmap];0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs181954	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1974849	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2052547	0.81[AFR][1000 genomes]
rs2081087	0.88[AFR][1000 genomes]
rs2434584	0.88[AFR][1000 genomes]
rs245282	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs245285	0.84[JPT][hapmap];0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs245287	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs245295	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs245296	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs246114	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs27210	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs27211	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs27840	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2910577	0.88[AFR][1000 genomes]
rs2910592	0.88[AFR][1000 genomes]
rs2964193	0.88[AFR][1000 genomes]
rs2964195	0.81[AFR][1000 genomes]
rs2964200	0.88[AFR][1000 genomes]
rs2964205	0.82[AFR][1000 genomes]
rs34434884	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35263833	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35491600	0.90[EUR][1000 genomes]
rs35521508	0.80[EUR][1000 genomes]
rs35988720	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36120901	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36179294	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs37484	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs37485	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs37486	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs37488	0.88[AFR][1000 genomes]
rs37492	0.88[AFR][1000 genomes]
rs37516	0.88[AFR][1000 genomes]
rs37523	0.88[AFR][1000 genomes]
rs37526	0.88[AFR][1000 genomes]
rs37527	0.88[AFR][1000 genomes]
rs37528	0.88[AFR][1000 genomes]
rs37536	0.88[AFR][1000 genomes]
rs3846535	0.90[EUR][1000 genomes]
rs40209	0.88[AFR][1000 genomes]
rs40210	0.88[AFR][1000 genomes]
rs4099272	0.90[EUR][1000 genomes]
rs4099273	0.90[EUR][1000 genomes]
rs41384	0.82[JPT][hapmap];0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs42963	0.82[AFR][1000 genomes]
rs58174847	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67884475	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71624201	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs905199	0.90[EUR][1000 genomes]
rs931745	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs986459	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57642200-57649400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:57645800-57648000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:57645800-57649800	Weak transcription	Placenta	Placenta
4	chr5:57647000-57649800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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